Knowledge Base
Getting started
- Quick start guide
- Workflows and Flowcharts for Antibody Analysis
- Sanger Tutorial 1. Assembling Chromatograms
- Sanger Tutorial 2. Sanger Chain association
- Sanger Tutorial 3. Using Name Schemes to Pair and Assemble Sequences
- NGS Tutorial 1. Sequence Analysis
General
- FAQs
- Accessing Geneious Biologics
- Creating Folders
- Sharing Folders
- Adding Searchable Info to Folders
- Uploading Files
Sanger Pre-processing
- Grouping Sequences
- Batch Rename
- Batch Assemble Sanger Sequences
- Finding and Calling Heterozygotes
- Pairing Heavy and Light Chains
- Using Name Schemes to Pair Chains and Assemble Sequences
NGS and Single Cell Analysis
- Single Cell Analysis Workflows
- Merging Paired Reads
- Setting Paired Reads
- Collapse UMI Duplicates and Separate Barcodes
- Understanding Single Cell technologies: Barcodes and UMIs
- How to Specify Barcodes
Antibody Annotation and Analysis
- Antibody Annotator
- Annotating Differences Relative to the Germline
- Antibody Sequence Liabilities
- How to Customize Sequence Liabilities and Assets
- Clustering Options
- Adjusting CDR definitions
Viewing your Annotation Results
- Using graphs for quality assurance
- Repairing low quality sequences after annotation
- Adding Assay Data to your analysis results
- Exporting and Extracting annotated sequences
- Extract and Recluster
- Using custom labels
Discovery and Candidate Selection
- Filtering your sequences
- Sequence alignment
- Comparing results across multiple experiments
- Understanding "clusters"
- Using graphs to interpret clusters and clonotypes
- Understanding clonotypes and how to find them in your data