Knowledge Base

Getting started

• Quick start guide
• Sanger Tutorial 1. Assembling Chromatograms
• Sanger Tutorial 2. Sanger Chain association
• Sanger Tutorial 3. Using Name Schemes to pair and assemble sequences
• NGS Tutorial 1. Sequence Analysis
• NGS Tutorial 2. Sample Comparisons

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Setting up your Organization with Geneious Biologics

• Single Sign-On
• What Is a Name Scheme and Why Is It Useful?
• How to Create a Name Scheme
• How to Use a Name Scheme
• Users and Groups

Pre-processing

• Assembling Sanger Sequences
• Pairing Heavy and Light Chains
• How do I merge paired reads?
• How do I set paired reads?
• How do I rename a large number of sequences or documents?
• How do I find and call heterozygous bases?

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Antibody Annotation and Analysis

• What are antibody sequence liabilities?
• Single Cell Analysis Workflows
• Can I adjust my CDR definitions?
• What is the Antibody Annotator and how does it work?
• How do I annotate and view germline differences?
• How do I add additional annotations to my sequences?

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Viewing your Annotation Results

• Can I add assay data to my analysis results?
• Dynamic Reports
• How do I filter my results?
• How do I view and extract annotated sequences?
• What are labels and how do I add them to my sequences?

Collections

• What is a Collection?
• Creating a Collection
• Searching Collections
• Adding Sequences to a Collection from an Annotation Result
• Adding New Sequences to Collection

Sequence viewer

• How do I search for a motif within my sequences in the Sequence Viewer?
• Can I change the color of my nucleotide and amino acid sequences?

Further analysis

• How do I align sequences?
• Reclustering - clustering similar sequences together based on similarity
• How do I compare antibody annotator results from multiple experiments?
• How do I repair low quality sequences after annotation?
• How do I find common occuring motifs in my sequences?

Data and integration

• Managing API Keys
• Is there a REST API available?
• Can I use Geneious Prime together with Geneious Biologics?
• What file types are supported for import/export?

Reference databases

• What are Reference Databases?
• How do I use custom sequences as my reference sequence database?
• How do I create Primer sets?

Account Administration

• How do I get access to Geneious Biologics?
• How do I reset my password?
• What is the difference between administrator and non-administrator accounts?

General

• What is a clonotype and how can I find them in my data?
• Viewing Job Status and History
• How do I upload files?
• What browsers are supported?
• Submitting Feedback
• Sharing Folders

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