Getting Started
Tutorials
- Sanger Tutorial 1. Assembling and Chain-Pairing Sanger Sequences
- Sanger Tutorial 2: Analyzing Antibodies with Assay Data
- Sanger Tutorial 3. Assembling Chromatograms and Flagging Heterozygotes
- NGS Tutorial 1. Sequence Analysis
- NGS Tutorial 2. Monitoring Clonal Expansion
- NGS Tutorial 3. Using Barcodes and UMIs
General
- Creating Folders
- Sharing Folders
- Adding Searchable Info to Folders
- Uploading Files
- Moving Files
- Viewing Job Status and History
Antibody Sanger Analysis
- Workflows for Sanger Antibody Analysis
- Antibody Annotator
- Grouping Sequences
- Batch Assemble Sanger Sequences
- Finding and Calling Heterozygotes
- Pairing Heavy and Light Chains
Antibody NGS Analysis
Antibody Single Cell Analysis
- Single Cell Analysis Workflows
- Single Cell Antibody Annotator
- Setting Paired Reads
- Collapse UMI Duplicates and Separate Barcodes
- Understanding Single Cell technologies: Barcodes and UMIs
- Single Cell Antibody Analysis: All Sequences Table Columns
Peptide Analysis
Annotation Options In-Depth
- Annotating variants relative to your reference database
- Antibody Sequence Liabilities
- Clustering options
- Using Feature Databases to identify Fusion Proteins
- Saving your analysis settings as profiles
- Protein Statistics
Viewing your Annotation Results
- Using Graphs for Quality Assurance
- Repairing Low-quality Sequences after Annotation
- Adding Assay Data to your Analysis Results
- Exporting Annotated Sequences and Sequence Tables
- Using Custom Labels
- How to Customize the Sequences Table
Discovery and Candidate Selection
- Filtering your Sequences
- Sequence Alignment
- Comparing Results across Multiple Experiments
- Editing your Sequences
- Understanding "Clusters"
- Network and Tree plots: Identifying clonotype and sequence relationships
Collections
Accounts and Users
Reference Databases
- Understanding Reference Databases
- How to make a Custom Antibody Reference Database
- Analyzing TCR sequences in Geneious Biologics
- General Template Databases
- Linker Databases
- Primer sets