Megan Kennington
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Single Clone Antibody Analysis
What is Single Clone Antibody Analysis? The Single Clone Antibody Analysis operation is an alternate way to annotate and analyse the variable regions of standard IgG-like molecules. It combines the...
Can I have different region cluster combinations?
This article is about how to analyse custom combinations of sequence region together. For more information about how clusters can be useful, see this article. You can specify arbitrary combinations...
How do I annotate and view germline differences?
To annotate the differences between the input sequence and reference sequence, select the Annotate germline gene differences option in the Antibody annotator popup window. Run the Antibody annotat...
Collapse UMI Duplicates and Separate Barcodes
What is the Collapse UMI Duplicates and Separate Barcodes operation? Depending on sequencing platform and laboratory preparation, your sequences may have adapters, barcodes, unique molecular identi...
How do I group standalone sequences?
Sequence lists make it easier to manage large numbers of sequences by grouping related sequences into a single document. To group standalone sequences or multiple sequences lists into a sequence l...
How do I rename a large number of sequences or documents?
The Batch rename operation replaces any field with combinations of other fields, new text, and can also perform regular expressions to achieve complex renaming operations. Existing fields can be re...
How do I set paired reads?
This article discusses setting paired reads without merging. Merging paired reads is closely related, and discussed here. Read files from paired-end sequencing are required to be paired prior to as...
How do I merge paired reads?
This article discusses merging NGS paired reads. Setting paired reads without merging is closely related, and discussed here. You can also read about the best way to assemble Sanger sequences here....
How to Use a Name Scheme
This article describes how to use a Name Scheme to enrich your data and simplify analysis. Name schemes can only be created by your organization's administrators, but are available for everyone in ...
What is a Collection?
Collections are a way of saving curated lists of annotated antibody sequences, complete with assay data and other relevant sequence information. Collections can be searched against to find any sequ...